Index A | B | C | D | E | F | G | H | I | J | L | M | O | P | Q | R | S | T | U | V | W A applyMeshTransformation() (in module spam.DIC.deform) applyPhi() (in module spam.DIC.deform) applyPhiField() (in module spam.DIC.deform) applyPhiPython() (in module spam.DIC.deform) applyRegistrationToPoints() (in module spam.DIC.kinematics) average() (in module spam.filters.movingFilters) B ballVolume() (in module spam.excursions.elkc) BCFieldFromDVCField() (in module spam.mesh.unstructured) betaCovariance() (in module spam.measurements.covariance) binaryDilation() (in module spam.filters.morphologicalOperations) binaryErosion() (in module spam.filters.morphologicalOperations) binaryGeodesicReconstruction() (in module spam.filters.morphologicalOperations) binaryMorphologicalGradient() (in module spam.filters.morphologicalOperations) binning() (in module spam.DIC.deform) boundingBoxes() (in module spam.label.label) C centresOfMass() (in module spam.label.label) changeAxis() (spam.visual.visualClass.ereg method) changeBins() (spam.visual.visualClass.JHist method) changeCB() (spam.visual.visualClass.ereg method) changeColorF() (spam.visual.visualClass.ereg method) changeComp() (spam.visual.visualClass.ereg method) changeDistance() (spam.visual.visualClass.JHist method) changeDistanceType() (spam.visual.visualClass.PhaseDiagram method) changeImage() (spam.visual.visualClass.QtCropWidget method) changeNBP() (spam.visual.visualClass.JHist method) changeSigma() (spam.visual.visualClass.PhaseDiagram method) checkerBoard() (in module spam.helpers.imageManipulation) checkSlave() (spam.visual.visualClass.ereg method) clearImage() (spam.visual.QtImageViewer.QtImageViewer method) computeHistogram() (spam.visual.visualClass.JHist method) computePhaseDiagram() (spam.visual.visualClass.PhaseDiagram method) computePhi() (in module spam.deformation.deformationFunction) computeRigidPhi() (in module spam.deformation.deformationFunction) contactingLabels() (in module spam.label.contacts) contactOrientations() (in module spam.label.contacts) contactOrientationsAssembly() (in module spam.label.contacts) contactPoints() (in module spam.label.contacts) convertLabelToFloat() (in module spam.label.label) convertUnsignedIntegers() (in module spam.helpers.imageManipulation) convexFillHoles() (in module spam.label.label) convexVolume() (in module spam.label.label) covarianceAlongAxis() (in module spam.measurements.covariance) covarianceSubPixel() (in module spam.measurements.covariance) createCuboid() (in module spam.mesh.unstructured) createCylinder() (in module spam.mesh.unstructured) createCylindricalMask() (in module spam.mesh.structured) createLexicoCoordinates() (in module spam.mesh.structured) crop() (in module spam.helpers.imageManipulation) D ddic() (in module spam.DIC.ddic) DEBUG (spam.helpers.test.TestSpam attribute) decomposeF() (in module spam.deformation.deformationFunction) decomposeFfield() (in module spam.deformation.deformationField) decomposePhi() (in module spam.deformation.deformationFunction) decomposePhiField() (in module spam.deformation.deformationField) detectOverSegmentation() (in module spam.label.label) detectUnderSegmentation() (in module spam.label.label) directionalErosion() (in module spam.filters.morphologicalOperations) displaySettings() (in module spam.helpers.optionsParser) distanceField() (in module spam.filters) (in module spam.filters.distanceField) distanceMax() (spam.visual.visualClass.PhaseDiagram method) distributionDensity() (in module spam.plotting.orientationPlotter) E elementaryStiffnessMatrix() (in module spam.mesh.tetrahedra) ellipseAxes() (in module spam.label.label) equalize() (spam.visual.visualClass.ereg method) equivalentRadii() (in module spam.label.label) ereg (class in spam.visual.visualClass) erodeLabels() (in module spam.label.label) Error estimateDisplacementFromQuadraticFit() (in module spam.DIC.kinematics) estimateLocalQuadraticCoherency() (in module spam.DIC.kinematics) eulerCharacteristic() (in module spam.measurements.globalDescriptors) expectedMesures() (in module spam.excursions.elkc) F fabricTensor() (in module spam.orientations.analyse) fetchTwoGrains() (in module spam.label.contacts) FfieldBagi() (in module spam.deformation.deformationField) FfieldRegularGeers() (in module spam.deformation.deformationField) FfieldRegularQ8() (in module spam.deformation.deformationField) fieldGaussToUniform() (in module spam.excursions.randomFields) fieldUniformToGauss() (in module spam.excursions.randomFields) filterIsolatedCells() (in module spam.label.label) FinalStep (class in spam.visual.visualClass) findFullCoverage() (spam.visual.visualClass.PhaseDiagram method) findHistogramPeaks() (in module spam.helpers.histogramTools) fitCovariance() (in module spam.measurements.covariance) fitEllipsoid() (spam.visual.visualClass.JHist method) fitVonMisesFisher() (in module spam.orientations.analyse) fixOversegmentation() (in module spam.label.label) fixUndersegmentation() (in module spam.label.label) flag() (in module spam.excursions.elkc) G gaussianCovariance() (in module spam.measurements.covariance) gaussianMinkowskiFunctionals() (in module spam.excursions.elkc) gaussianMixtureParameters() (in module spam.DIC.multimodal) generateIcosphere() (in module spam.orientations.generate) generateIsotropic() (in module spam.orientations.generate) generateVonMisesFisher() (in module spam.orientations.generate) generic() (in module spam.measurements.globalDescriptors) getCorrelationLengthFormArea() (in module spam.excursions.elkc) getDisplacementFromNeighbours() (in module spam.DIC.kinematics) getImagettes() (in module spam.DIC.grid) getImagettesLabelled() (in module spam.label.label) getLabel() (in module spam.label.label) getMeshCharacteristicLength() (in module spam.mesh.unstructured) getNeighbours() (in module spam.label.label) getThresholdFromVolume() (in module spam.excursions.elkc) globalCorrelation() (in module spam.DIC.globalDVC) globalStiffnessMatrix() (in module spam.mesh.tetrahedra) gmshToSpam() (in module spam.mesh.unstructured) greyDilation() (in module spam.filters.morphologicalOperations) greyErosion() (in module spam.filters.morphologicalOperations) greyMorphologicalGradient() (in module spam.filters.morphologicalOperations) H hasImage() (spam.visual.QtImageViewer.QtImageViewer method) hermitePolynomial() (in module spam.excursions.elkc) hessian() (in module spam.filters.movingFilters) histogramNorm() (in module spam.helpers.histogramTools) I image() (spam.visual.QtImageViewer.QtImageViewer method) InputError interpolatePhiField() (in module spam.DIC.kinematics) isochoricField() (in module spam.DIC.globalDVC) isTwoDtiff() (in module spam.helpers.optionsParser) J JHist (class in spam.visual.visualClass) L labelledContacts() (in module spam.label.contacts) labelsOnEdges() (in module spam.label.label) labelTetrahedra() (in module spam.label.label) labelTetrahedraForScipyDelaunay() (in module spam.label.label) ldic() (in module spam.DIC.ldic) leftMouseButtonDoubleClicked (spam.visual.QtImageViewer.QtImageViewer attribute) leftMouseButtonPressed (spam.visual.QtImageViewer.QtImageViewer attribute) leftMouseButtonReleased (spam.visual.QtImageViewer.QtImageViewer attribute) lkcCuboid() (in module spam.excursions.elkc) load() (in module spam.datasets) loadConcreteNe() (in module spam.datasets) loadConcreteXr() (in module spam.datasets) loadDEMboxsizeCentreRadius() (in module spam.datasets) loadDEMspheresMMR() (in module spam.datasets) loadDEMtouchingGrainsAndBranchVector() (in module spam.datasets) loadImageFromFile() (spam.visual.QtImageViewer.QtImageViewer method) loadPickle() (in module spam.datasets) loadSnow() (in module spam.datasets) loadStructuredMesh() (in module spam.datasets) loadtiff() (in module spam.datasets) loadUniformDEMboxsizeCentreRadius() (in module spam.datasets) loadUnstructuredMesh() (in module spam.datasets) localDetection() (in module spam.label.contacts) localDetectionAssembly() (in module spam.label.contacts) M makeBlurryNoisySphere() (in module spam.kalisphera.kalisphera) makeBlurryNoisySpheroid() (in module spam.kalisphera.spheroid) makeGrid() (in module spam.DIC.grid) makeLabelsSequential() (in module spam.label.label) makeSphere() (in module spam.kalisphera.kalisphera) meanOrientation() (in module spam.orientations.analyse) mergeRegistrationAndDiscreteFields() (in module spam.DIC.kinematics) mergeRegularGridAndDiscrete() (in module spam.DIC.kinematics) modifyPhi() (spam.visual.visualClass.ereg method) module spam spam.datasets spam.deformation spam.deformation.deformationField spam.deformation.deformationFunction spam.DIC spam.DIC.ddic spam.DIC.deform spam.DIC.globalDVC spam.DIC.grid spam.DIC.kinematics spam.DIC.ldic spam.DIC.multimodal spam.DIC.pixelSearch spam.DIC.registration spam.errors spam.excursions spam.excursions.elkc spam.excursions.randomFields spam.filters spam.filters.distanceField spam.filters.morphologicalOperations spam.filters.movingFilters spam.helpers spam.helpers.histogramTools spam.helpers.imageManipulation spam.helpers.optionsParser spam.helpers.test spam.helpers.tsvio spam.helpers.vtkio spam.kalisphera spam.kalisphera.kalisphera spam.kalisphera.spheroid spam.label spam.label.contacts spam.label.ITKwatershed spam.label.label spam.measurements spam.measurements.covariance spam.measurements.globalDescriptors spam.measurements.porosityField spam.mesh spam.mesh.objects spam.mesh.projection spam.mesh.structured spam.mesh.tetrahedra spam.mesh.unstructured spam.orientations spam.orientations.analyse spam.orientations.generate spam.plotting spam.plotting.greyLevelHistogram spam.plotting.multivariateGaussians spam.plotting.orientationPlotter spam.plotting.particleSizeDistribution spam.plotting.tetrahedraPlotter spam.tests spam.visual spam.visual.QtImageViewer spam.visual.visualClass momentOfInertia() (in module spam.label.label) morphologicalReconstruction() (in module spam.filters.morphologicalOperations) mouseDoubleClickEvent() (spam.visual.QtImageViewer.QtImageViewer method) mousePressEvent() (spam.visual.QtImageViewer.QtImageViewer method) mouseReleaseEvent() (spam.visual.QtImageViewer.QtImageViewer method) moveLabels() (in module spam.label.label) multimodalRegistration() (in module spam.DIC.multimodal) multipleShifts() (in module spam.helpers.imageManipulation) O output() (spam.visual.visualClass.ereg method) (spam.visual.visualClass.QtCropWidget method) P packObjectsFromList() (in module spam.mesh.objects) packSpheres() (in module spam.mesh.objects) parametersLogToGauss() (in module spam.excursions.randomFields) perimeter() (in module spam.measurements.globalDescriptors) PhaseDiagram (class in spam.visual.visualClass) phaseDiagram() (in module spam.DIC.multimodal) pixelSearchDiscrete() (in module spam.DIC.pixelSearch) pixelSearchLocal() (in module spam.DIC.pixelSearch) pixmap() (spam.visual.QtImageViewer.QtImageViewer method) plotDelaunay3D() (in module spam.plotting.tetrahedraPlotter) plotGreyLevelHistogram() (in module spam.plotting.greyLevelHistogram) plotMultivariateGaussians() (in module spam.plotting.multivariateGaussians) plotOrientations() (in module spam.plotting.orientationPlotter) plotParticleSizeDistribution() (in module spam.plotting.particleSizeDistribution) plotSphericalHistogram() (in module spam.plotting.orientationPlotter) plusOrMinusDist() (spam.visual.visualClass.JHist method) plusOrMinusNBP() (spam.visual.visualClass.JHist method) porosityField() (in module spam.measurements.porosityField) projectField() (in module spam.mesh.projection) projectionMatrices() (in module spam.DIC.globalDVC) projectObjects() (in module spam.mesh.projection) projectOrientation() (in module spam.orientations.analyse) projectTetFieldToGrains() (in module spam.mesh.unstructured) Q QtCropWidget (class in spam.visual.visualClass) QtImageViewer (class in spam.visual.QtImageViewer) R rankPoints() (in module spam.mesh.unstructured) readCorrelationTSV() (in module spam.helpers.tsvio) readStrainTSV() (in module spam.helpers.tsvio) readStructuredVTK() (in module spam.helpers.vtkio) readUnstructuredVTK() (in module spam.helpers.vtkio) rebuildImage() (in module spam.helpers.imageManipulation) reFit() (spam.visual.visualClass.JHist method) register() (in module spam.DIC.registration) registerMultiscale() (in module spam.DIC.registration) regularisationMatrix() (in module spam.DIC.globalDVC) regularisationParameters() (in module spam.DIC.globalDVC) removeLabels() (in module spam.label.label) rescale() (in module spam.helpers.imageManipulation) rescaleToInteger() (in module spam.helpers.imageManipulation) resetIdentity() (spam.visual.visualClass.ereg method) resetTSV() (spam.visual.visualClass.ereg method) resizeEvent() (spam.visual.QtImageViewer.QtImageViewer method) rightMouseButtonDoubleClicked (spam.visual.QtImageViewer.QtImageViewer attribute) rightMouseButtonPressed (spam.visual.QtImageViewer.QtImageViewer attribute) rightMouseButtonReleased (spam.visual.QtImageViewer.QtImageViewer attribute) S saveTIFF() (spam.visual.visualClass.ereg method) saveTSV() (spam.visual.visualClass.ereg method) saveTSVCrop() (spam.visual.visualClass.QtCropWidget method) secondSpectralMoment() (in module spam.excursions.elkc) setImage() (spam.visual.QtImageViewer.QtImageViewer method) setUp() (spam.helpers.test.TestSpam method) setVoronoi() (in module spam.label.label) shapeFunctions() (in module spam.mesh.tetrahedra) showHistogram() (spam.visual.visualClass.JHist method) showImages() (spam.visual.visualClass.ereg method) (spam.visual.visualClass.QtCropWidget method) showPhaseDiagram() (spam.visual.visualClass.PhaseDiagram method) shuffleLabels() (in module spam.label.label) simulateRandomField() (in module spam.excursions.randomFields) singleShift() (in module spam.helpers.imageManipulation) slicePadded() (in module spam.helpers.imageManipulation) slideIm1() (spam.visual.visualClass.ereg method) slideIm1Max() (spam.visual.visualClass.JHist method) slideIm1Min() (spam.visual.visualClass.JHist method) slideIm2() (spam.visual.visualClass.ereg method) slideIm2Max() (spam.visual.visualClass.JHist method) slideIm2Min() (spam.visual.visualClass.JHist method) slideIndexedValChange() (spam.visual.visualClass.JHist method) slideXMax() (spam.visual.visualClass.QtCropWidget method) slideXMin() (spam.visual.visualClass.QtCropWidget method) slideXView() (spam.visual.visualClass.QtCropWidget method) slideYMax() (spam.visual.visualClass.QtCropWidget method) slideYMin() (spam.visual.visualClass.QtCropWidget method) slideYView() (spam.visual.visualClass.QtCropWidget method) slideZMax() (spam.visual.visualClass.QtCropWidget method) slideZMin() (spam.visual.visualClass.QtCropWidget method) slideZView() (spam.visual.visualClass.QtCropWidget method) spam module spam.datasets module spam.deformation module spam.deformation.deformationField module spam.deformation.deformationFunction module spam.DIC module spam.DIC.ddic module spam.DIC.deform module spam.DIC.globalDVC module spam.DIC.grid module spam.DIC.kinematics module spam.DIC.ldic module spam.DIC.multimodal module spam.DIC.pixelSearch module spam.DIC.registration module spam.errors module spam.excursions module spam.excursions.elkc module spam.excursions.randomFields module spam.filters module spam.filters.distanceField module spam.filters.morphologicalOperations module spam.filters.movingFilters module spam.helpers module spam.helpers.histogramTools module spam.helpers.imageManipulation module spam.helpers.optionsParser module spam.helpers.test module spam.helpers.tsvio module spam.helpers.vtkio module spam.kalisphera module spam.kalisphera.kalisphera module spam.kalisphera.spheroid module spam.label module spam.label.contacts module spam.label.ITKwatershed module spam.label.label module spam.measurements module spam.measurements.covariance module spam.measurements.globalDescriptors module spam.measurements.porosityField module spam.mesh module spam.mesh.objects module spam.mesh.projection module spam.mesh.structured module spam.mesh.tetrahedra module spam.mesh.unstructured module spam.orientations module spam.orientations.analyse module spam.orientations.generate module spam.plotting module spam.plotting.greyLevelHistogram module spam.plotting.multivariateGaussians module spam.plotting.orientationPlotter module spam.plotting.particleSizeDistribution module spam.plotting.tetrahedraPlotter module spam.tests module spam.visual module spam.visual.QtImageViewer module spam.visual.visualClass module splitImage() (in module spam.helpers.imageManipulation) stackToArray() (in module spam.helpers.imageManipulation) starCorrelation() (spam.visual.visualClass.FinalStep method) str2bool() (in module spam.helpers.optionsParser) structuringElement() (in module spam.mesh.structured) surfaceArea() (in module spam.measurements.globalDescriptors) surfaceLabels() (in module spam.DIC.globalDVC) T tearDown() (spam.helpers.test.TestSpam method) TestSpam (class in spam.helpers.test) tetCentroid() (in module spam.mesh.tetrahedra) tetVolume() (in module spam.mesh.tetrahedra) tetVolumes() (in module spam.mesh.unstructured) TIFFtoVTK() (in module spam.helpers.vtkio) totalCurvature() (in module spam.measurements.globalDescriptors) triangulate() (in module spam.mesh.unstructured) trueSphericity() (in module spam.label.label) TSVtoTIFF() (in module spam.helpers.tsvio) TSVtoVTK() (in module spam.helpers.tsvio) U updateViewer() (spam.visual.QtImageViewer.QtImageViewer method) V validate() (spam.visual.visualClass.ereg method) variance() (in module spam.filters.movingFilters) volume() (in module spam.measurements.globalDescriptors) volumes() (in module spam.label.label) W watershed() (in module spam.label.ITKwatershed) writeGlyphsVTK() (in module spam.helpers.vtkio) writeRegistrationTSV() (in module spam.helpers.tsvio) writeStrainTSV() (in module spam.helpers.tsvio) writeStructuredVTK() (in module spam.helpers.vtkio) writeUnstructuredVTK() (in module spam.helpers.vtkio)
